Expression analysis of genes encoding mitogen-activated protein kinases in maize provides a key link between abiotic stress signaling and plant reproduction.
Identifieur interne : 001D72 ( Main/Exploration ); précédent : 001D71; suivant : 001D73Expression analysis of genes encoding mitogen-activated protein kinases in maize provides a key link between abiotic stress signaling and plant reproduction.
Auteurs : Wei Sun [République populaire de Chine] ; Hao Chen ; Juan Wang ; Hong Wei Sun ; Shu Ke Yang ; Ya Lin Sang ; Xing Bo Lu ; Xiao Hui XuSource :
- Functional & integrative genomics [ 1438-7948 ] ; 2015.
Descripteurs français
- KwdFr :
- Acide abscissique (pharmacologie), Analyse de profil d'expression de gènes (MeSH), Basse température (MeSH), Chlorure de sodium (pharmacologie), Chromosomes de plante (génétique), Duplication de gène (MeSH), Exons (génétique), Famille multigénique (MeSH), Gènes de plante (MeSH), Introns (génétique), Mitogen-Activated Protein Kinases (composition chimique), Mitogen-Activated Protein Kinases (génétique), Mitogen-Activated Protein Kinases (métabolisme), Motifs d'acides aminés (MeSH), Phylogenèse (MeSH), Protéines végétales (composition chimique), Protéines végétales (génétique), Protéines végétales (métabolisme), Reproduction (effets des médicaments et des substances chimiques), Reproduction (génétique), Régions promotrices (génétique) (génétique), Régulation de l'expression des gènes codant pour des enzymes (effets des médicaments et des substances chimiques), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Spécificité d'organe (effets des médicaments et des substances chimiques), Spécificité d'organe (génétique), Stress physiologique (effets des médicaments et des substances chimiques), Stress physiologique (génétique), Structure tertiaire des protéines (MeSH), Sécheresses (MeSH), Séquence conservée (génétique), Transduction du signal (génétique), Zea mays (effets des médicaments et des substances chimiques), Zea mays (enzymologie), Zea mays (génétique).
- MESH :
- composition chimique : Mitogen-Activated Protein Kinases, Protéines végétales.
- effets des médicaments et des substances chimiques : Reproduction, Régulation de l'expression des gènes codant pour des enzymes, Régulation de l'expression des gènes végétaux, Spécificité d'organe, Stress physiologique, Zea mays.
- enzymologie : Zea mays.
- génétique : Chromosomes de plante, Exons, Introns, Mitogen-Activated Protein Kinases, Protéines végétales, Reproduction, Régions promotrices (génétique), Spécificité d'organe, Stress physiologique, Séquence conservée, Transduction du signal, Zea mays.
- métabolisme : Mitogen-Activated Protein Kinases, Protéines végétales.
- pharmacologie : Acide abscissique, Chlorure de sodium.
- Analyse de profil d'expression de gènes, Basse température, Duplication de gène, Famille multigénique, Gènes de plante, Motifs d'acides aminés, Phylogenèse, Structure tertiaire des protéines, Sécheresses.
English descriptors
- KwdEn :
- Abscisic Acid (pharmacology), Amino Acid Motifs (MeSH), Chromosomes, Plant (genetics), Cold Temperature (MeSH), Conserved Sequence (genetics), Droughts (MeSH), Exons (genetics), Gene Duplication (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Enzymologic (drug effects), Gene Expression Regulation, Plant (drug effects), Genes, Plant (MeSH), Introns (genetics), Mitogen-Activated Protein Kinases (chemistry), Mitogen-Activated Protein Kinases (genetics), Mitogen-Activated Protein Kinases (metabolism), Multigene Family (MeSH), Organ Specificity (drug effects), Organ Specificity (genetics), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (genetics), Plant Proteins (metabolism), Promoter Regions, Genetic (genetics), Protein Structure, Tertiary (MeSH), Reproduction (drug effects), Reproduction (genetics), Signal Transduction (genetics), Sodium Chloride (pharmacology), Stress, Physiological (drug effects), Stress, Physiological (genetics), Zea mays (drug effects), Zea mays (enzymology), Zea mays (genetics).
- MESH :
- chemical , chemistry : Mitogen-Activated Protein Kinases, Plant Proteins.
- chemical , genetics : Mitogen-Activated Protein Kinases, Plant Proteins.
- chemical , metabolism : Mitogen-Activated Protein Kinases, Plant Proteins.
- chemical , pharmacology : Abscisic Acid, Sodium Chloride.
- drug effects : Gene Expression Regulation, Enzymologic, Gene Expression Regulation, Plant, Organ Specificity, Reproduction, Stress, Physiological, Zea mays.
- enzymology : Zea mays.
- genetics : Chromosomes, Plant, Conserved Sequence, Exons, Introns, Organ Specificity, Promoter Regions, Genetic, Reproduction, Signal Transduction, Stress, Physiological, Zea mays.
- Amino Acid Motifs, Cold Temperature, Droughts, Gene Duplication, Gene Expression Profiling, Genes, Plant, Multigene Family, Phylogeny, Protein Structure, Tertiary.
Abstract
Mitogen-activated protein kinases (MAPKs) play important roles in stress responses and development in plants. Maize (Zea mays), an important cereal crop, is a model plant species for molecular studies. In the last decade, several MAPKs have been identified in maize; however, their functions have not been studied extensively. Genome-wide identification and expression analysis of maize MAPK genes could provide valuable information for understanding their functions. In this study, 20 non-redundant maize MAPK genes (ZmMPKs) were identified via a genome-wide survey. Phylogenetic analysis of MAPKs from maize, rice (Oryza sativa), Arabidopsis (Arabidopsis thaliana), poplar (Populus trichocarpa), and tomato (Solanum lycopersicum) classified them into four major classes. ZmMPKs in the same class had similar domains, motifs, and genomic structures. Gene duplication investigations suggested that segmental duplications made a large contribution to the expansion of ZmMPKs. A number of cis-acting elements related to plant development and response to stress and hormones were identified in the promoter regions of ZmMPKs. Furthermore, transcript profile analysis in eight tissues and organs at various developmental stages demonstrated that most ZmMPKs were preferentially expressed in reproductive tissues and organs. The transcript abundance of most ZmMPKs changed significantly under salt, drought, cold, or abscisic acid (ABA) treatments, implying that they might participate in abiotic stress and ABA signaling. These expression analyses indicated that ZmMPKs might serve as linkers between abiotic stress signaling and plant reproduction. Our data will deepen our understanding of the complexity of the maize MAPK gene family and provide new clues to investigate their functions.
DOI: 10.1007/s10142-014-0410-3
PubMed: 25388988
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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(MeSH)</term><term>Plant Proteins (chemistry)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (metabolism)</term><term>Promoter Regions, Genetic (genetics)</term><term>Protein Structure, Tertiary (MeSH)</term><term>Reproduction (drug effects)</term><term>Reproduction (genetics)</term><term>Signal Transduction (genetics)</term><term>Sodium Chloride (pharmacology)</term><term>Stress, Physiological (drug effects)</term><term>Stress, Physiological (genetics)</term><term>Zea mays (drug effects)</term><term>Zea mays (enzymology)</term><term>Zea mays (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Acide abscissique (pharmacologie)</term><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Basse température (MeSH)</term><term>Chlorure de sodium (pharmacologie)</term><term>Chromosomes de plante (génétique)</term><term>Duplication de gène (MeSH)</term><term>Exons (génétique)</term><term>Famille multigénique (MeSH)</term><term>Gènes de plante (MeSH)</term><term>Introns (génétique)</term><term>Mitogen-Activated Protein Kinases (composition chimique)</term><term>Mitogen-Activated Protein Kinases (génétique)</term><term>Mitogen-Activated Protein Kinases (métabolisme)</term><term>Motifs d'acides aminés (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Protéines végétales (composition chimique)</term><term>Protéines végétales (génétique)</term><term>Protéines végétales (métabolisme)</term><term>Reproduction (effets des médicaments et des substances chimiques)</term><term>Reproduction (génétique)</term><term>Régions promotrices (génétique) (génétique)</term><term>Régulation de l'expression des gènes codant pour des enzymes (effets des médicaments et des substances chimiques)</term><term>Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques)</term><term>Spécificité d'organe (effets des médicaments et des substances chimiques)</term><term>Spécificité d'organe (génétique)</term><term>Stress physiologique (effets des médicaments et des substances chimiques)</term><term>Stress physiologique (génétique)</term><term>Structure tertiaire des protéines (MeSH)</term><term>Sécheresses (MeSH)</term><term>Séquence conservée (génétique)</term><term>Transduction du signal (génétique)</term><term>Zea mays (effets des médicaments et des substances chimiques)</term><term>Zea mays (enzymologie)</term><term>Zea mays (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Mitogen-Activated Protein Kinases</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Mitogen-Activated Protein Kinases</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Mitogen-Activated Protein Kinases</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" 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mays</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Zea mays</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Plant</term><term>Conserved Sequence</term><term>Exons</term><term>Introns</term><term>Organ Specificity</term><term>Promoter Regions, Genetic</term><term>Reproduction</term><term>Signal Transduction</term><term>Stress, Physiological</term><term>Zea mays</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes de plante</term><term>Exons</term><term>Introns</term><term>Mitogen-Activated Protein Kinases</term><term>Protéines végétales</term><term>Reproduction</term><term>Régions promotrices (génétique)</term><term>Spécificité d'organe</term><term>Stress physiologique</term><term>Séquence conservée</term><term>Transduction du signal</term><term>Zea mays</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Mitogen-Activated Protein Kinases</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Acide abscissique</term><term>Chlorure de sodium</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Motifs</term><term>Cold Temperature</term><term>Droughts</term><term>Gene Duplication</term><term>Gene Expression Profiling</term><term>Genes, Plant</term><term>Multigene Family</term><term>Phylogeny</term><term>Protein Structure, Tertiary</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Basse température</term><term>Duplication de gène</term><term>Famille multigénique</term><term>Gènes de plante</term><term>Motifs d'acides aminés</term><term>Phylogenèse</term><term>Structure tertiaire des protéines</term><term>Sécheresses</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Mitogen-activated protein kinases (MAPKs) play important roles in stress responses and development in plants. Maize (Zea mays), an important cereal crop, is a model plant species for molecular studies. In the last decade, several MAPKs have been identified in maize; however, their functions have not been studied extensively. Genome-wide identification and expression analysis of maize MAPK genes could provide valuable information for understanding their functions. In this study, 20 non-redundant maize MAPK genes (ZmMPKs) were identified via a genome-wide survey. Phylogenetic analysis of MAPKs from maize, rice (Oryza sativa), Arabidopsis (Arabidopsis thaliana), poplar (Populus trichocarpa), and tomato (Solanum lycopersicum) classified them into four major classes. ZmMPKs in the same class had similar domains, motifs, and genomic structures. Gene duplication investigations suggested that segmental duplications made a large contribution to the expansion of ZmMPKs. A number of cis-acting elements related to plant development and response to stress and hormones were identified in the promoter regions of ZmMPKs. Furthermore, transcript profile analysis in eight tissues and organs at various developmental stages demonstrated that most ZmMPKs were preferentially expressed in reproductive tissues and organs. The transcript abundance of most ZmMPKs changed significantly under salt, drought, cold, or abscisic acid (ABA) treatments, implying that they might participate in abiotic stress and ABA signaling. These expression analyses indicated that ZmMPKs might serve as linkers between abiotic stress signaling and plant reproduction. Our data will deepen our understanding of the complexity of the maize MAPK gene family and provide new clues to investigate their functions. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25388988</PMID><DateCompleted><Year>2015</Year><Month>09</Month><Day>07</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1438-7948</ISSN><JournalIssue CitedMedium="Internet"><Volume>15</Volume><Issue>1</Issue><PubDate><Year>2015</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Functional & integrative genomics</Title><ISOAbbreviation>Funct Integr Genomics</ISOAbbreviation></Journal><ArticleTitle>Expression analysis of genes encoding mitogen-activated protein kinases in maize provides a key link between abiotic stress signaling and plant reproduction.</ArticleTitle><Pagination><MedlinePgn>107-20</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s10142-014-0410-3</ELocationID><Abstract><AbstractText>Mitogen-activated protein kinases (MAPKs) play important roles in stress responses and development in plants. Maize (Zea mays), an important cereal crop, is a model plant species for molecular studies. In the last decade, several MAPKs have been identified in maize; however, their functions have not been studied extensively. Genome-wide identification and expression analysis of maize MAPK genes could provide valuable information for understanding their functions. In this study, 20 non-redundant maize MAPK genes (ZmMPKs) were identified via a genome-wide survey. Phylogenetic analysis of MAPKs from maize, rice (Oryza sativa), Arabidopsis (Arabidopsis thaliana), poplar (Populus trichocarpa), and tomato (Solanum lycopersicum) classified them into four major classes. ZmMPKs in the same class had similar domains, motifs, and genomic structures. Gene duplication investigations suggested that segmental duplications made a large contribution to the expansion of ZmMPKs. A number of cis-acting elements related to plant development and response to stress and hormones were identified in the promoter regions of ZmMPKs. Furthermore, transcript profile analysis in eight tissues and organs at various developmental stages demonstrated that most ZmMPKs were preferentially expressed in reproductive tissues and organs. The transcript abundance of most ZmMPKs changed significantly under salt, drought, cold, or abscisic acid (ABA) treatments, implying that they might participate in abiotic stress and ABA signaling. These expression analyses indicated that ZmMPKs might serve as linkers between abiotic stress signaling and plant reproduction. Our data will deepen our understanding of the complexity of the maize MAPK gene family and provide new clues to investigate their functions. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Wei</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Shandong Rice Research Institute, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Hao</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Juan</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Hong Wei</ForeName><Initials>HW</Initials></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Shu Ke</ForeName><Initials>SK</Initials></Author><Author ValidYN="Y"><LastName>Sang</LastName><ForeName>Ya Lin</ForeName><Initials>YL</Initials></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Xing Bo</ForeName><Initials>XB</Initials></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Xiao Hui</ForeName><Initials>XH</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>11</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Funct Integr Genomics</MedlineTA><NlmUniqueID>100939343</NlmUniqueID><ISSNLinking>1438-793X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>451W47IQ8X</RegistryNumber><NameOfSubstance UI="D012965">Sodium Chloride</NameOfSubstance></Chemical><Chemical><RegistryNumber>72S9A8J5GW</RegistryNumber><NameOfSubstance UI="D000040">Abscisic Acid</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.7.11.24</RegistryNumber><NameOfSubstance UI="D020928">Mitogen-Activated Protein Kinases</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000040" MajorTopicYN="N">Abscisic Acid</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="N">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020816" MajorTopicYN="N">Amino Acid Motifs</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003080" MajorTopicYN="N">Cold Temperature</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017124" MajorTopicYN="N">Conserved Sequence</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055864" MajorTopicYN="N">Droughts</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005091" MajorTopicYN="N">Exons</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020440" MajorTopicYN="N">Gene Duplication</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015971" MajorTopicYN="Y">Gene Expression Regulation, Enzymologic</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug 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